IL_6GAW_008
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GCAC*GC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_008 not in the Motif Atlas
- Geometric match to IL_1NTA_003
- Geometric discrepancy: 0.197
- The information below is about IL_1NTA_003
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.3
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 36
Unit IDs
6GAW|1|AA|G|116
6GAW|1|AA|C|117
6GAW|1|AA|A|118
6GAW|1|AA|C|119
*
6GAW|1|AA|G|133
6GAW|1|AA|C|134
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AO
- Uncharacterized protein
- Chain AQ
- uS17m
- Chain Aj
- 28S ribosomal protein S34, mitochondrial
- Chain An
- Aurora kinase A interacting protein 1
Coloring options: