IL_6GAW_020

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_020 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.2405

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GAW|1|AA|C|373
6GAW|1|AA|C|374
6GAW|1|AA|A|375
*
6GAW|1|AA|U|382
6GAW|1|AA|G|383

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AF

Mitochondrial ribosomal protein S6

Chain AR

Mitochondrial ribosomal protein S18C

Chain AU

bS21m

Chain Am

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1