IL_6GAW_022

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_022 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.165

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6GAW|1|AA|A|419
6GAW|1|AA|A|420
6GAW|1|AA|A|421
6GAW|1|AA|C|422
6GAW|1|AA|U|423
*
6GAW|1|AA|A|439
6GAW|1|AA|C|440
6GAW|1|AA|U|441
6GAW|1|AA|A|442
6GAW|1|AA|U|443

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AK

28S ribosomal protein S11, mitochondrial

Chain AU

bS21m

Chain BA

Large subunit ribosomal RNA; LSU rRNA