IL_6GAW_025

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

GGU*AC

Length

5 nucleotides

Bulged bases

6GAW|1|AA|G|530

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_025 not in the Motif Atlas

Homologous match to IL_4LFB_036

Geometric discrepancy: 0.2582

The information below is about IL_4LFB_036

Detailed Annotation

Single bulged G

Broad Annotation

No text annotation

Motif group

IL_28408.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

76

Unit IDs

6GAW|1|AA|G|529
6GAW|1|AA|G|530
6GAW|1|AA|U|531
*
6GAW|1|AA|A|834
6GAW|1|AA|C|835

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AX

MT-CO3 mRNA, mitochondrial

Chain Am

Coiled-coil-helix-coiled-coil-helix domain-containing protein 1