IL_6GAW_061
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- CCCCAAA*UCCAAUG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_061 not in the Motif Atlas
- Geometric match to IL_5XWG_002
- Geometric discrepancy: 0.3977
- The information below is about IL_5XWG_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74768.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
6GAW|1|BA|C|394
6GAW|1|BA|C|395
6GAW|1|BA|C|396
6GAW|1|BA|C|397
6GAW|1|BA|A|398
6GAW|1|BA|A|399
6GAW|1|BA|A|400
*
6GAW|1|BA|U|411
6GAW|1|BA|C|412
6GAW|1|BA|C|413
6GAW|1|BA|A|414
6GAW|1|BA|A|415
6GAW|1|BA|U|416
6GAW|1|BA|G|417
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B0
- Mitochondrial ribosomal protein L27
- Chain B3
- uL30m
- Chain Bb
- Mitochondrial ribosomal protein L38
- Chain Bk
- Mitochondrial ribosomal protein L48
- Chain Bo
- 39S ribosomal protein L52, mitochondrial
- Chain Bt
- Mitochondrial ribosomal protein L57
Coloring options: