IL_6GAW_066
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUGAGUAA*UGAAAUU
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_066 not in the Motif Atlas
- Homologous match to IL_5J7L_289
- Geometric discrepancy: 0.1233
- The information below is about IL_5J7L_289
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
6GAW|1|BA|A|640
6GAW|1|BA|U|641
6GAW|1|BA|G|642
6GAW|1|BA|A|643
6GAW|1|BA|G|644
6GAW|1|BA|U|645
6GAW|1|BA|A|646
6GAW|1|BA|A|647
*
6GAW|1|BA|U|1006
6GAW|1|BA|G|1007
6GAW|1|BA|A|1008
6GAW|1|BA|A|1009
6GAW|1|BA|A|1010
6GAW|1|BA|U|1011
6GAW|1|BA|U|1012
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain B5
- bL32m
- Chain BF
- Mitochondrial ribosomal protein L4
- Chain BR
- 39S ribosomal protein L17, mitochondrial
- Chain BU
- Mitochondrial ribosomal protein L20
- Chain BW
- uL22m
Coloring options: