IL_6GAW_080

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CAUAAUCACUUG*CUUG

Length

16 nucleotides

Bulged bases

6GAW|1|BA|A|933, 6GAW|1|BA|U|939, 6GAW|1|BA|U|958

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAW|1|BA|C|929
6GAW|1|BA|A|930
6GAW|1|BA|U|931
6GAW|1|BA|A|932
6GAW|1|BA|A|933
6GAW|1|BA|U|934
6GAW|1|BA|C|935
6GAW|1|BA|A|936
6GAW|1|BA|C|937
6GAW|1|BA|U|938
6GAW|1|BA|U|939
6GAW|1|BA|G|940
*
6GAW|1|BA|C|956
6GAW|1|BA|U|957
6GAW|1|BA|U|958
6GAW|1|BA|G|959

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain An

Aurora kinase A interacting protein 1

Chain BC

Translation initiation factor IF-2, mitochondrial