IL_6GAW_082

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACG*CUAU

Length

7 nucleotides

Bulged bases

6GAW|1|BA|C|1050, 6GAW|1|BA|U|1436, 6GAW|1|BA|A|1437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_082 not in the Motif Atlas

Homologous match to IL_5J7L_321

Geometric discrepancy: 0.0895

The information below is about IL_5J7L_321

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_83389.2

Basepair signature

cWW-cWW

Number of instances in this motif group

5

Unit IDs

6GAW|1|BA|A|1049
6GAW|1|BA|C|1050
6GAW|1|BA|G|1051
*
6GAW|1|BA|C|1435
6GAW|1|BA|U|1436
6GAW|1|BA|A|1437
6GAW|1|BA|U|1438

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B5

bL32m

Chain BE

ICT1

Chain BW

uL22m