IL_6GAW_092
3D structure
- PDB id
- 6GAW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- AUC*GGUUU
- Length
- 8 nucleotides
- Bulged bases
- 6GAW|1|BA|U|1314
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAW_092 not in the Motif Atlas
- Geometric match to IL_4WF9_092
- Geometric discrepancy: 0.1999
- The information below is about IL_4WF9_092
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_36931.3
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 26
Unit IDs
6GAW|1|BA|A|1282
6GAW|1|BA|U|1283
6GAW|1|BA|C|1284
*
6GAW|1|BA|G|1312
6GAW|1|BA|G|1313
6GAW|1|BA|U|1314
6GAW|1|BA|U|1315
6GAW|1|BA|U|1316
Current chains
- Chain BA
- 16S ribosomal RNA, mitochondrial
Nearby chains
- Chain BC
- Translation initiation factor IF-2, mitochondrial
- Chain BJ
- Mitochondrial ribosomal protein L10
- Chain BQ
- 39S ribosomal protein L16, mitochondrial
- Chain Bt
- Mitochondrial ribosomal protein L57
Coloring options: