IL_6GAW_095

3D structure

PDB id

6GAW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the complete 55S ribosome.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

6GAW|1|BA|G|1399, 6GAW|1|BA|A|1400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAW_095 not in the Motif Atlas

Geometric match to IL_7RQB_097

Geometric discrepancy: 0.1466

The information below is about IL_7RQB_097

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_90933.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

11

Unit IDs

6GAW|1|BA|A|1333
6GAW|1|BA|U|1334
6GAW|1|BA|C|1335
*
6GAW|1|BA|G|1397
6GAW|1|BA|U|1398
6GAW|1|BA|G|1399
6GAW|1|BA|A|1400
6GAW|1|BA|U|1401

Current chains

Chain BA

16S ribosomal RNA, mitochondrial

Nearby chains

Chain B5

bL32m

Chain BE

ICT1