IL_6GAZ_002

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AA*UAU

Length

5 nucleotides

Bulged bases

6GAZ|1|AA|A|216

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_002 not in the Motif Atlas

Homologous match to IL_5J7L_002

Geometric discrepancy: 0.21

The information below is about IL_5J7L_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6GAZ|1|AA|A|39
6GAZ|1|AA|A|40
*
6GAZ|1|AA|U|215
6GAZ|1|AA|A|216
6GAZ|1|AA|U|217

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AP

bS16m, MRPS16

Chain Ac

Mitochondrial ribosomal protein S25

Chain BC

Translation initiation factor IF-2, mitochondrial