IL_6GAZ_010

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUAA*UAA

Length

7 nucleotides

Bulged bases

6GAZ|1|AA|U|187

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_010 not in the Motif Atlas

Geometric match to IL_5UNE_003

Geometric discrepancy: 0.1914

The information below is about IL_5UNE_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

6GAZ|1|AA|U|186
6GAZ|1|AA|U|187
6GAZ|1|AA|A|188
6GAZ|1|AA|A|189
*
6GAZ|1|AA|U|210
6GAZ|1|AA|A|211
6GAZ|1|AA|A|212

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AP

bS16m, MRPS16

Chain Ac

Mitochondrial ribosomal protein S25

Chain BC

Translation initiation factor IF-2, mitochondrial