IL_6GAZ_016
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 6GAZ|1|AA|A|293
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAZ_016 not in the Motif Atlas
- Homologous match to IL_5J7L_026
- Geometric discrepancy: 0.1114
- The information below is about IL_5J7L_026
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_38186.6
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 4
Unit IDs
6GAZ|1|AA|C|290
6GAZ|1|AA|G|291
6GAZ|1|AA|U|292
6GAZ|1|AA|A|293
6GAZ|1|AA|A|294
6GAZ|1|AA|A|295
6GAZ|1|AA|G|296
*
6GAZ|1|AA|C|484
6GAZ|1|AA|G|485
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AF
- Mitochondrial ribosomal protein S6
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AQ
- Mitochondrial ribosomal protein S17
- Chain Am
- Mitochondrial ribosomal protein S37
- Chain An
- Aurora kinase A interacting protein 1
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