IL_6GAZ_020

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCA*UG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_020 not in the Motif Atlas

Geometric match to IL_3WBM_004

Geometric discrepancy: 0.2473

The information below is about IL_3WBM_004

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_18188.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GAZ|1|AA|C|373
6GAZ|1|AA|C|374
6GAZ|1|AA|A|375
*
6GAZ|1|AA|U|382
6GAZ|1|AA|G|383

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AF

Mitochondrial ribosomal protein S6

Chain AR

Mitochondrial ribosomal protein S18C

Chain AU

Mitochondrial ribosomal protein S21

Chain Am

Mitochondrial ribosomal protein S37