IL_6GAZ_022

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_022 not in the Motif Atlas

Homologous match to IL_5J7L_037

Geometric discrepancy: 0.163

The information below is about IL_5J7L_037

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.7

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

14

Unit IDs

6GAZ|1|AA|A|419
6GAZ|1|AA|A|420
6GAZ|1|AA|A|421
6GAZ|1|AA|C|422
6GAZ|1|AA|U|423
*
6GAZ|1|AA|A|439
6GAZ|1|AA|C|440
6GAZ|1|AA|U|441
6GAZ|1|AA|A|442
6GAZ|1|AA|U|443

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AK

Mitochondrial ribosomal protein S11

Chain AU

Mitochondrial ribosomal protein S21