IL_6GAZ_028

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCU*AG

Length

5 nucleotides

Bulged bases

6GAZ|1|AA|C|609

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_028 not in the Motif Atlas

Homologous match to IL_4LFB_042

Geometric discrepancy: 0.1726

The information below is about IL_4LFB_042

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

149

Unit IDs

6GAZ|1|AA|C|608
6GAZ|1|AA|C|609
6GAZ|1|AA|U|610
*
6GAZ|1|AA|A|693
6GAZ|1|AA|G|694

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AE

Mitochondrial ribosomal protein S5

Chain AN

Mitochondrial ribosomal protein S14

Chain Ai

Mitochondrial ribosomal protein S33