IL_6GAZ_031

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CA*UAG

Length

5 nucleotides

Bulged bases

6GAZ|1|AA|A|681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_031 not in the Motif Atlas

Geometric match to IL_5J7L_049

Geometric discrepancy: 0.1239

The information below is about IL_5J7L_049

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.7

Basepair signature

cWW-L-cWW

Number of instances in this motif group

132

Unit IDs

6GAZ|1|AA|C|620
6GAZ|1|AA|A|621
*
6GAZ|1|AA|U|680
6GAZ|1|AA|A|681
6GAZ|1|AA|G|682

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AE

Mitochondrial ribosomal protein S5

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14

Chain AX

MT-CO3 mRNA, mitochondrial

Chain BC

Translation initiation factor IF-2, mitochondrial