IL_6GAZ_032

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUC*GUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GAZ_032 not in the Motif Atlas

Homologous match to IL_5J7L_050

Geometric discrepancy: 0.0756

The information below is about IL_5J7L_050

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_28037.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

65

Unit IDs

6GAZ|1|AA|A|621
6GAZ|1|AA|U|622
6GAZ|1|AA|C|623
*
6GAZ|1|AA|G|678
6GAZ|1|AA|U|679
6GAZ|1|AA|U|680

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain AC

Mitochondrial ribosomal protein S24

Chain AE

Mitochondrial ribosomal protein S5

Chain AJ

Mitochondrial ribosomal protein S10

Chain AN

Mitochondrial ribosomal protein S14

Chain AX

MT-CO3 mRNA, mitochondrial