IL_6GAZ_033
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAA*UAAG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAZ_033 not in the Motif Atlas
- Geometric match to IL_4ZNP_002
- Geometric discrepancy: 0.2233
- The information below is about IL_4ZNP_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_58355.2
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 43
Unit IDs
6GAZ|1|AA|C|629
6GAZ|1|AA|A|630
6GAZ|1|AA|A|631
6GAZ|1|AA|A|632
*
6GAZ|1|AA|U|652
6GAZ|1|AA|A|653
6GAZ|1|AA|A|654
6GAZ|1|AA|G|655
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AB
- Mitochondrial ribosomal protein S2
- Chain AC
- Mitochondrial ribosomal protein S24
- Chain AE
- Mitochondrial ribosomal protein S5
- Chain AI
- Mitochondrial ribosomal protein S9
- Chain Ak
- Mitochondrial ribosomal protein S35
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