IL_6GAZ_039
3D structure
- PDB id
- 6GAZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CACCC*GACAAG
- Length
- 11 nucleotides
- Bulged bases
- 6GAZ|1|AA|A|919
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GAZ_039 not in the Motif Atlas
- Homologous match to IL_6CZR_167
- Geometric discrepancy: 0.5994
- The information below is about IL_6CZR_167
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.3
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
6GAZ|1|AA|C|851
6GAZ|1|AA|A|852
6GAZ|1|AA|C|853
6GAZ|1|AA|C|854
6GAZ|1|AA|C|855
*
6GAZ|1|AA|G|915
6GAZ|1|AA|A|916
6GAZ|1|AA|C|917
6GAZ|1|AA|A|918
6GAZ|1|AA|A|919
6GAZ|1|AA|G|920
Current chains
- Chain AA
- 12S ribosomal RNA, mitochondrial
Nearby chains
- Chain AL
- Mitochondrial ribosomal protein S12
- Chain AX
- MT-CO3 mRNA, mitochondrial
- Chain An
- Aurora kinase A interacting protein 1
- Chain BC
- Translation initiation factor IF-2, mitochondrial
Coloring options: