IL_6GAZ_042

3D structure

PDB id

6GAZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Unique features of mammalian mitochondrial translation initiation revealed by cryo-EM. This file contains the 28S ribosomal subunit.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAG*CACAACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GAZ|1|AA|G|867
6GAZ|1|AA|U|868
6GAZ|1|AA|A|869
6GAZ|1|AA|G|870
*
6GAZ|1|AA|C|897
6GAZ|1|AA|A|898
6GAZ|1|AA|C|899
6GAZ|1|AA|A|900
6GAZ|1|AA|A|901
6GAZ|1|AA|C|902
6GAZ|1|AA|C|903

Current chains

Chain AA

12S ribosomal RNA, mitochondrial

Nearby chains

Chain Aj

Mitochondrial ribosomal protein S34

Chain An

Aurora kinase A interacting protein 1

Chain BC

Translation initiation factor IF-2, mitochondrial