IL_6GBZ_011

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GAAC*GAGUGAAAAAGAAC

Length

18 nucleotides

Bulged bases

6GBZ|1|A|A|504, 6GBZ|1|A|A|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_011 not in the Motif Atlas

Geometric match to IL_5J7L_255

Geometric discrepancy: 0.094

The information below is about IL_5J7L_255

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_81516.2

Basepair signature

cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L

Number of instances in this motif group

6

Unit IDs

6GBZ|1|A|G|481
6GBZ|1|A|A|482
6GBZ|1|A|A|483
6GBZ|1|A|C|484
*
6GBZ|1|A|G|496
6GBZ|1|A|A|497
6GBZ|1|A|G|498
6GBZ|1|A|U|499
6GBZ|1|A|G|500
6GBZ|1|A|A|501
6GBZ|1|A|A|502
6GBZ|1|A|A|503
6GBZ|1|A|A|504
6GBZ|1|A|A|505
6GBZ|1|A|G|506
6GBZ|1|A|A|507
6GBZ|1|A|A|508
6GBZ|1|A|C|509

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain S

50S ribosomal protein L22

Chain U

50S ribosomal protein L24