IL_6GBZ_029

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAGG*CCAACC

Length

12 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_029 not in the Motif Atlas

Geometric match to IL_3FTE_001

Geometric discrepancy: 0.3815

The information below is about IL_3FTE_001

Detailed Annotation

Quadruple sheared

Broad Annotation

Quadruple sheared

Motif group

IL_29495.1

Basepair signature

cWW-tSH-tSH-tHS-tHS-cWW

Number of instances in this motif group

6

Unit IDs

6GBZ|1|A|G|875
6GBZ|1|A|C|876
6GBZ|1|A|A|877
6GBZ|1|A|A|878
6GBZ|1|A|G|879
6GBZ|1|A|G|880
*
6GBZ|1|A|C|897
6GBZ|1|A|C|898
6GBZ|1|A|A|899
6GBZ|1|A|A|900
6GBZ|1|A|C|901
6GBZ|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain M

50S ribosomal protein L16