IL_6GBZ_030

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGG*UUAC

Length

7 nucleotides

Bulged bases

6GBZ|1|A|A|896

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_030 not in the Motif Atlas

Geometric match to IL_5M0H_001

Geometric discrepancy: 0.3643

The information below is about IL_5M0H_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

6GBZ|1|A|G|880
6GBZ|1|A|G|881
6GBZ|1|A|G|882
*
6GBZ|1|A|U|894
6GBZ|1|A|U|895
6GBZ|1|A|A|896
6GBZ|1|A|C|897

Current chains

Chain A

23S ribosomal RNA

Nearby chains