IL_6GBZ_113

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGAACUAGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_113 not in the Motif Atlas

Homologous match to IL_4WF9_117

Geometric discrepancy: 0.1031

The information below is about IL_4WF9_117

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

6GBZ|1|A|G|1666
6GBZ|1|A|G|1667
6GBZ|1|A|A|1668
6GBZ|1|A|A|1669
6GBZ|1|A|C|1670
6GBZ|1|A|U|1671
6GBZ|1|A|A|1672
6GBZ|1|A|G|1673
6GBZ|1|A|G|1674
*
6GBZ|1|A|C|1990
6GBZ|1|A|U|1991
6GBZ|1|A|G|1992
6GBZ|1|A|U|1993
6GBZ|1|A|C|1994

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain K

50S ribosomal protein L14