IL_6GBZ_120

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUG*UAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GBZ_120 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.3015

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

17

Unit IDs

6GBZ|1|A|C|2103
6GBZ|1|A|C|2104
6GBZ|1|A|U|2105
6GBZ|1|A|U|2106
6GBZ|1|A|G|2107
*
6GBZ|1|A|U|2182
6GBZ|1|A|A|2183
6GBZ|1|A|A|2184
6GBZ|1|A|U|2185
6GBZ|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains