IL_6GBZ_125

3D structure

PDB id

6GBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 5

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAUGGUAGU*GCGAGAGUAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6GBZ|1|B|C|71
6GBZ|1|B|G|72
6GBZ|1|B|A|73
6GBZ|1|B|U|74
6GBZ|1|B|G|75
6GBZ|1|B|G|76
6GBZ|1|B|U|77
6GBZ|1|B|A|78
6GBZ|1|B|G|79
6GBZ|1|B|U|80
*
6GBZ|1|B|G|96
6GBZ|1|B|C|97
6GBZ|1|B|G|98
6GBZ|1|B|A|99
6GBZ|1|B|G|100
6GBZ|1|B|A|101
6GBZ|1|B|G|102
6GBZ|1|B|U|103
6GBZ|1|B|A|104
6GBZ|1|B|G|105

Current chains

Chain B

5S ribosomal RNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain M

50S ribosomal protein L16

Chain V

50S ribosomal protein L25

Chain Z

50S ribosomal protein L30