3D structure

PDB id
6GC4 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate state 3
Experimental method
ELECTRON MICROSCOPY
Resolution
4.3 Å

Loop

Sequence
CCAGUAG*CGAACG
Length
13 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC4_007 not in the Motif Atlas
Homologous match to IL_7RQB_007
Geometric discrepancy: 0.1919
The information below is about IL_7RQB_007
Detailed Annotation
7x6 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_76042.2
Basepair signature
cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
9

Unit IDs

6GC4|1|A|C|239
6GC4|1|A|C|240
6GC4|1|A|A|241
6GC4|1|A|G|242
6GC4|1|A|U|243
6GC4|1|A|A|244
6GC4|1|A|G|245
*
6GC4|1|A|C|253
6GC4|1|A|G|254
6GC4|1|A|A|255
6GC4|1|A|A|256
6GC4|1|A|C|257
6GC4|1|A|G|258

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15

Coloring options:


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