IL_6GC4_060

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

6GC4|1|A|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC4_060 not in the Motif Atlas

Geometric match to IL_7RQB_068

Geometric discrepancy: 0.0976

The information below is about IL_7RQB_068

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_65969.2

Basepair signature

cWW-tSH-tSH-tHH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

6GC4|1|A|C|1686
6GC4|1|A|G|1687
6GC4|1|A|U|1688
6GC4|1|A|A|1689
6GC4|1|A|A|1690
6GC4|1|A|C|1691
*
6GC4|1|A|G|1696
6GC4|1|A|G|1697
6GC4|1|A|A|1698
6GC4|1|A|G|1699
6GC4|1|A|A|1700
6GC4|1|A|A|1701
6GC4|1|A|G|1702

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2