IL_6GC4_107

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UAGC*GUGGG

Length

9 nucleotides

Bulged bases

6GC4|1|A|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC4_107 not in the Motif Atlas

Geometric match to IL_3NPQ_006

Geometric discrepancy: 0.3835

The information below is about IL_3NPQ_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96332.5

Basepair signature

cWW-cWW-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

6GC4|1|A|U|2081
6GC4|1|A|A|2082
6GC4|1|A|G|2083
6GC4|1|A|C|2084
*
6GC4|1|A|G|2235
6GC4|1|A|U|2236
6GC4|1|A|G|2237
6GC4|1|A|G|2238
6GC4|1|A|G|2239

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L2

Chain X

50S ribosomal protein L28