IL_6GC4_109

3D structure

PDB id

6GC4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 3

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAGC*GCGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC4_109 not in the Motif Atlas

Geometric match to IL_7A0S_056

Geometric discrepancy: 0.3411

The information below is about IL_7A0S_056

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GC4|1|A|C|2350
6GC4|1|A|G|2351
6GC4|1|A|A|2352
6GC4|1|A|G|2353
6GC4|1|A|C|2354
*
6GC4|1|A|G|2363
6GC4|1|A|C|2364
6GC4|1|A|G|2365
6GC4|1|A|A|2366
6GC4|1|A|G|2367

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27