IL_6GC6_019

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CGAC*GCG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_019 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.3106

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.1

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

6GC6|1|A|C|737
6GC6|1|A|G|738
6GC6|1|A|A|739
6GC6|1|A|C|740
*
6GC6|1|A|G|757
6GC6|1|A|C|758
6GC6|1|A|G|759

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 2

50S ribosomal protein L34