IL_6GC6_030

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_030 not in the Motif Atlas

Homologous match to IL_4WF9_039

Geometric discrepancy: 0.2245

The information below is about IL_4WF9_039

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.6

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

6

Unit IDs

6GC6|1|A|U|1018
6GC6|1|A|U|1019
6GC6|1|A|A|1020
6GC6|1|A|A|1021
6GC6|1|A|G|1022
6GC6|1|A|U|1023
6GC6|1|A|G|1024
*
6GC6|1|A|C|1140
6GC6|1|A|U|1141
6GC6|1|A|A|1142
6GC6|1|A|A|1143
6GC6|1|A|A|1144

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13