IL_6GC6_031

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GGGAAAC*GGAAGAUGUAACGGGGC

Length

24 nucleotides

Bulged bases

6GC6|1|A|U|1130

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_031 not in the Motif Atlas

Homologous match to IL_5J7L_281

Geometric discrepancy: 0.4276

The information below is about IL_5J7L_281

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_50715.3

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-tWW-L-cWW-L-L-L-R-L

Number of instances in this motif group

4

Unit IDs

6GC6|1|A|G|1024
6GC6|1|A|G|1025
6GC6|1|A|G|1026
6GC6|1|A|A|1027
6GC6|1|A|A|1028
6GC6|1|A|A|1029
6GC6|1|A|C|1030
*
6GC6|1|A|G|1124
6GC6|1|A|G|1125
6GC6|1|A|A|1126
6GC6|1|A|A|1127
6GC6|1|A|G|1128
6GC6|1|A|A|1129
6GC6|1|A|U|1130
6GC6|1|A|G|1131
6GC6|1|A|U|1132
6GC6|1|A|A|1133
6GC6|1|A|A|1134
6GC6|1|A|C|1135
6GC6|1|A|G|1136
6GC6|1|A|G|1137
6GC6|1|A|G|1138
6GC6|1|A|G|1139
6GC6|1|A|C|1140

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

50S ribosomal protein L13