IL_6GC6_056

3D structure

PDB id

6GC6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 2

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGAGG*UGGAGC

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC6_056 not in the Motif Atlas

Geometric match to IL_5TBW_026

Geometric discrepancy: 0.3467

The information below is about IL_5TBW_026

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_82488.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GC6|1|A|G|1719
6GC6|1|A|U|1720
6GC6|1|A|G|1721
6GC6|1|A|A|1722
6GC6|1|A|G|1723
6GC6|1|A|G|1724
*
6GC6|1|A|U|1736
6GC6|1|A|G|1737
6GC6|1|A|G|1738
6GC6|1|A|A|1739
6GC6|1|A|G|1740
6GC6|1|A|C|1741

Current chains

Chain A

23S ribosomal RNA

Nearby chains