IL_6GC7_006

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

CCAGUAG*CGAACG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_006 not in the Motif Atlas

Homologous match to IL_7RQB_007

Geometric discrepancy: 0.2171

The information below is about IL_7RQB_007

Detailed Annotation

7x6 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_76042.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

6GC7|1|A|C|239
6GC7|1|A|C|240
6GC7|1|A|A|241
6GC7|1|A|G|242
6GC7|1|A|U|243
6GC7|1|A|A|244
6GC7|1|A|G|245
*
6GC7|1|A|C|253
6GC7|1|A|G|254
6GC7|1|A|A|255
6GC7|1|A|A|256
6GC7|1|A|C|257
6GC7|1|A|G|258

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15