IL_6GC7_010
3D structure
- PDB id
- 6GC7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit assembly intermediate state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- GAACC*GGAGUGAAAAAGAAC
- Length
- 20 nucleotides
- Bulged bases
- 6GC7|1|A|A|504, 6GC7|1|A|A|508
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GC7_010 not in the Motif Atlas
- Geometric match to IL_4V9F_014
- Geometric discrepancy: 0.2593
- The information below is about IL_4V9F_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31504.1
- Basepair signature
- cWW-cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
6GC7|1|A|G|481
6GC7|1|A|A|482
6GC7|1|A|A|483
6GC7|1|A|C|484
6GC7|1|A|C|485
*
6GC7|1|A|G|495
6GC7|1|A|G|496
6GC7|1|A|A|497
6GC7|1|A|G|498
6GC7|1|A|U|499
6GC7|1|A|G|500
6GC7|1|A|A|501
6GC7|1|A|A|502
6GC7|1|A|A|503
6GC7|1|A|A|504
6GC7|1|A|A|505
6GC7|1|A|G|506
6GC7|1|A|A|507
6GC7|1|A|A|508
6GC7|1|A|C|509
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain S
- 50S ribosomal protein L22
- Chain U
- 50S ribosomal protein L24
Coloring options: