IL_6GC7_041

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UUAAG*UGAUGA

Length

11 nucleotides

Bulged bases

6GC7|1|A|U|1523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_041 not in the Motif Atlas

Geometric match to IL_4V9F_056

Geometric discrepancy: 0.3446

The information below is about IL_4V9F_056

Detailed Annotation

tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_62654.1

Basepair signature

cWW-tSH-tHH-tHS-cWW

Number of instances in this motif group

1

Unit IDs

6GC7|1|A|U|1467
6GC7|1|A|U|1468
6GC7|1|A|A|1469
6GC7|1|A|A|1470
6GC7|1|A|G|1471
*
6GC7|1|A|U|1520
6GC7|1|A|G|1521
6GC7|1|A|A|1522
6GC7|1|A|U|1523
6GC7|1|A|G|1524
6GC7|1|A|A|1525

Current chains

Chain A

23S ribosomal RNA

Nearby chains