IL_6GC7_042

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

UGUAGG*CUGAGG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_042 not in the Motif Atlas

Geometric match to IL_8ZA4_003

Geometric discrepancy: 0.3229

The information below is about IL_8ZA4_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

6GC7|1|A|U|1474
6GC7|1|A|G|1475
6GC7|1|A|U|1476
6GC7|1|A|A|1477
6GC7|1|A|G|1478
6GC7|1|A|G|1479
*
6GC7|1|A|C|1512
6GC7|1|A|U|1513
6GC7|1|A|G|1514
6GC7|1|A|A|1515
6GC7|1|A|G|1516
6GC7|1|A|G|1517

Current chains

Chain A

23S ribosomal RNA

Nearby chains