IL_6GC7_051

3D structure

PDB id

6GC7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate state 1

Experimental method

ELECTRON MICROSCOPY

Resolution

4.3 Å

Loop

Sequence

GUGAGGU*AUGGAGC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC7_051 not in the Motif Atlas

Geometric match to IL_7RQB_001

Geometric discrepancy: 0.3878

The information below is about IL_7RQB_001

Detailed Annotation

Triple sheared with non-canonical cWW

Broad Annotation

Triple sheared

Motif group

IL_66414.6

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

6GC7|1|A|G|1719
6GC7|1|A|U|1720
6GC7|1|A|G|1721
6GC7|1|A|A|1722
6GC7|1|A|G|1723
6GC7|1|A|G|1724
6GC7|1|A|U|1725
*
6GC7|1|A|A|1735
6GC7|1|A|U|1736
6GC7|1|A|G|1737
6GC7|1|A|G|1738
6GC7|1|A|A|1739
6GC7|1|A|G|1740
6GC7|1|A|C|1741

Current chains

Chain A

23S ribosomal RNA

Nearby chains