IL_6GC7_072
3D structure
- PDB id
- 6GC7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 50S ribosomal subunit assembly intermediate state 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.3 Å
Loop
- Sequence
- CGCCA*UGCG
- Length
- 9 nucleotides
- Bulged bases
- 6GC7|1|A|C|995
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_6GC7_072 not in the Motif Atlas
- Geometric match to IL_1D4R_001
- Geometric discrepancy: 0.2836
- The information below is about IL_1D4R_001
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
6GC7|1|A|C|992
6GC7|1|A|G|993
6GC7|1|A|C|994
6GC7|1|A|C|995
6GC7|1|A|A|996
*
6GC7|1|A|U|1159
6GC7|1|A|G|1160
6GC7|1|A|C|1161
6GC7|1|A|G|1162
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain J
- 50S ribosomal protein L13
- Chain Q
- 50S ribosomal protein L20
- Chain R
- 50S ribosomal protein L21
- Chain Z
- 50S ribosomal protein L30
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