3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC8_006 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0983
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

6GC8|1|A|G|188
6GC8|1|A|G|189
6GC8|1|A|A|190
6GC8|1|A|A|191
6GC8|1|A|C|192
6GC8|1|A|U|193
6GC8|1|A|G|194
*
6GC8|1|A|C|201
6GC8|1|A|U|202
6GC8|1|A|A|203
6GC8|1|A|A|204
6GC8|1|A|G|205
6GC8|1|A|U|206
6GC8|1|A|A|207
6GC8|1|A|C|208

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain L
50S ribosomal protein L15
Chain X
50S ribosomal protein L28

Coloring options:


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