IL_6GC8_009

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

6GC8|1|A|G|277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_009 not in the Motif Atlas

Homologous match to IL_5J7L_253

Geometric discrepancy: 0.1958

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

6GC8|1|A|C|274
6GC8|1|A|C|275
6GC8|1|A|U|276
6GC8|1|A|G|277
6GC8|1|A|A|278
6GC8|1|A|A|279
6GC8|1|A|U|280
6GC8|1|A|C|281
*
6GC8|1|A|G|359
6GC8|1|A|U|360
6GC8|1|A|G|361
6GC8|1|A|A|362
6GC8|1|A|G|363

Current chains

Chain A

23S ribosomal RNA

Nearby chains