IL_6GC8_030

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAG*CAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_030 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.1387

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

6GC8|1|A|G|875
6GC8|1|A|C|876
6GC8|1|A|A|877
6GC8|1|A|A|878
6GC8|1|A|G|879
*
6GC8|1|A|C|898
6GC8|1|A|A|899
6GC8|1|A|A|900
6GC8|1|A|C|901
6GC8|1|A|C|902

Current chains

Chain A

23S ribosomal RNA

Nearby chains