3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
UGCAAAC*GGACGUAUA
Length
16 nucleotides
Bulged bases
6GC8|1|A|A|1801, 6GC8|1|A|C|1816, 6GC8|1|A|U|1820
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_6GC8_069 not in the Motif Atlas
Homologous match to IL_7RQB_070
Geometric discrepancy: 0.1015
The information below is about IL_7RQB_070
Detailed Annotation
Kink-turn related
Broad Annotation
No text annotation
Motif group
IL_17069.3
Basepair signature
cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
Number of instances in this motif group
5

Unit IDs

6GC8|1|A|U|1798
6GC8|1|A|G|1799
6GC8|1|A|C|1800
6GC8|1|A|A|1801
6GC8|1|A|A|1802
6GC8|1|A|A|1803
6GC8|1|A|C|1804
*
6GC8|1|A|G|1813
6GC8|1|A|G|1814
6GC8|1|A|A|1815
6GC8|1|A|C|1816
6GC8|1|A|G|1817
6GC8|1|A|U|1818
6GC8|1|A|A|1819
6GC8|1|A|U|1820
6GC8|1|A|A|1821

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain C
50S ribosomal protein L2

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3987 s
Application loaded.