IL_6GC8_118

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

6GC8|1|A|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_118 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.2379

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

6GC8|1|A|A|844
6GC8|1|A|A|845
6GC8|1|A|U|846
6GC8|1|A|U|847
6GC8|1|A|C|848
*
6GC8|1|A|G|930
6GC8|1|A|U|931
6GC8|1|A|U|932
6GC8|1|A|A|933
6GC8|1|A|U|934

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L30