IL_6GC8_133

3D structure

PDB id

6GC8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S ribosomal subunit assembly intermediate - 50S rec*

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CCUUG*UAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GC8_133 not in the Motif Atlas

Geometric match to IL_7VYX_004

Geometric discrepancy: 0.2923

The information below is about IL_7VYX_004

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_49751.4

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

6GC8|1|A|C|2103
6GC8|1|A|C|2104
6GC8|1|A|U|2105
6GC8|1|A|U|2106
6GC8|1|A|G|2107
*
6GC8|1|A|U|2182
6GC8|1|A|A|2183
6GC8|1|A|A|2184
6GC8|1|A|U|2185
6GC8|1|A|G|2186

Current chains

Chain A

23S ribosomal RNA

Nearby chains