3D structure

PDB id
6GC8 (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S ribosomal subunit assembly intermediate - 50S rec*
Experimental method
ELECTRON MICROSCOPY
Resolution
3.8 Å

Loop

Sequence
CGAUGGUAGU*GCGAGAGUAG
Length
20 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

6GC8|1|B|C|71
6GC8|1|B|G|72
6GC8|1|B|A|73
6GC8|1|B|U|74
6GC8|1|B|G|75
6GC8|1|B|G|76
6GC8|1|B|U|77
6GC8|1|B|A|78
6GC8|1|B|G|79
6GC8|1|B|U|80
*
6GC8|1|B|G|96
6GC8|1|B|C|97
6GC8|1|B|G|98
6GC8|1|B|A|99
6GC8|1|B|G|100
6GC8|1|B|A|101
6GC8|1|B|G|102
6GC8|1|B|U|103
6GC8|1|B|A|104
6GC8|1|B|G|105

Current chains

Chain B
5S ribosomal RNA

Nearby chains

Chain A
Large subunit ribosomal RNA; LSU rRNA
Chain M
50S ribosomal protein L16
Chain V
50S ribosomal protein L25
Chain W
50S ribosomal protein L27
Chain Z
50S ribosomal protein L30

Coloring options:

Copyright 2025 BGSU RNA group. Page generated in 0.1768 s
Application loaded.