IL_6GQ1_007

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

AU*AGUUGU

Length

8 nucleotides

Bulged bases

6GQ1|1|1|U|147

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_007 not in the Motif Atlas

Homologous match to IL_5TBW_007

Geometric discrepancy: 0.304

The information below is about IL_5TBW_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_19724.3

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

4

Unit IDs

6GQ1|1|1|A|123
6GQ1|1|1|U|124
*
6GQ1|1|1|A|144
6GQ1|1|1|G|145
6GQ1|1|1|U|146
6GQ1|1|1|U|147
6GQ1|1|1|G|148
6GQ1|1|1|U|149

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain G

60S ribosomal protein L8-A

Chain N

60S ribosomal protein L15-A