IL_6GQ1_023

3D structure

PDB id

6GQ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM reconstruction of yeast 80S ribosome in complex with mRNA, tRNA and eEF2 (GMPPCP/sordarin)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.4 Å

Loop

Sequence

CC*GAG

Length

5 nucleotides

Bulged bases

6GQ1|1|1|A|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_6GQ1_023 not in the Motif Atlas

Homologous match to IL_8C3A_026

Geometric discrepancy: 0.1167

The information below is about IL_8C3A_026

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

6GQ1|1|1|C|752
6GQ1|1|1|C|753
*
6GQ1|1|1|G|779
6GQ1|1|1|A|780
6GQ1|1|1|G|781

Current chains

Chain 1

Saccharomyces cerevisiae S288C 35S pre-ribosomal RNA (RDN37-1), miscRNA

Nearby chains

Chain Q

60S ribosomal protein L18-A

Chain a

60S ribosomal protein L28

Chain b

60S ribosomal protein L29